Cynthia J. Gibas: search on Z-Library

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1

Identification of Candidate Genes Associated with Leaf Senescence in Cultivated Sunflower (Helianthus annuus L.)

Moschen, Sebastian, Bengoa Luoni, Sofia, Paniego, Norma B., Hopp, H. Esteban, Dosio, Guillermo A. A., Fernandez, Paula, Heinz, Ruth A., Gibas, Cynthia

Journal:

Year:

2014

Language:

english

File:

PDF, 2.07 MB

english, 2014

2

Design, Validation and Annotation of Transcriptome-Wide Oligonucleotide Probes for the Oligochaete Annelid Eisenia fetida

Gong, Ping, Pirooznia, Mehdi, Guan, Xin, Perkins, Edward J., Gibas, Cynthia

Journal:

Year:

2010

Language:

english

File:

PDF, 286 KB

english, 2010

3

Genome-Wide Analysis of the Expansin Gene Superfamily Reveals Grapevine-Specific Structural and Functional Characteristics

Dal Santo, Silvia, Vannozzi, Alessandro, Tornielli, Giovanni Battista, Fasoli, Marianna, Venturini, Luca, Pezzotti, Mario, Zenoni, Sara, Gibas, Cynthia

Journal:

Year:

2013

Language:

english

File:

PDF, 1.34 MB

english, 2013

4

An Efficiency Comparison of Document Preparation Systems Used in Academic Research and Development

Knauff, Markus, Nejasmic, Jelica, Gibas, Cynthia

Journal:

Year:

2014

Language:

english

File:

PDF, 616 KB

english, 2014

5

Software Note: Using probe secondary structure information to enhance Affymetrix GeneChip background estimates

Raad Z. Gharaibeh, Anthony A. Fodor, Cynthia J. Gibas

Journal:

Computational Biology and Chemistry

Year:

2007

Language:

english

File:

PDF, 505 KB

english, 2007

6

Light saturation curves show competence of the water splitting complex in inactive Photosystem II reaction centers

Ladislav Nedbal, Cynthia Gibas, John Whitmarsh

Journal:

Photosynthesis Research

Year:

1991

Language:

english

File:

PDF, 847 KB

english, 1991

7

Background correction using dinucleotide affinities improves the performance of GCRMA

Raad Z Gharaibeh, Anthony A Fodor, Cynthia J Gibas

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 454 KB

english, 2008

8

Secondary structure in the target as a confounding factor in synthetic oligomer microarray design

Vladyslava G Ratushna, Jennifer W Weller, Cynthia J Gibas

Journal:

Year:

2005

Language:

english

File:

PDF, 1.64 MB

english, 2005

9

Molecular targets for rapid identification ofBrucellaspp

Vladyslava G Ratushna, David M Sturgill, Sheela Ramamoorthy, Sherry A Reichow, Yongqun He, Raju Lathigra, Nammalwar Sriranganathan, Shirley M Halling, Stephen M Boyle, Cynthia J Gibas

Journal:

BMC Microbiology

Year:

2006

Language:

english

File:

PDF, 526 KB

english, 2006

10

Continuum Electrostatic Methods Applied to pH-Dependent Properties of Antibody–Antigen Association

Cynthia J. Gibas, Per Jambeck, Shankar Subramaniam

Journal:

Year:

2000

Language:

english

File:

PDF, 530 KB

english, 2000

11

The plastoquinone diffusion coefficient in chloroplasts and its mechanistic implications

Mary Blackwell, Cynthia Gibas, Scott Gygax, Debra Roman, Brandee Wagner

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

1994

Language:

english

File:

PDF, 1.14 MB

english, 1994

12

Exploring Metabolic Pathway Reconstruction and Genome-Wide Expression Profiling in Lactobacillus reuteri to Define Functional Probiotic Features

Saulnier, Delphine M., Santos, Filipe, Roos, Stefan, Mistretta, Toni-Ann, Spinler, Jennifer K., Molenaar, Douwe, Teusink, Bas, Versalovic, James, Gibas, Cynthia

Journal:

Year:

2011

Language:

english

File:

PDF, 515 KB

english, 2011

13

The illusion of specific capture: surface and solution studies of suboptimal oligonucleotide hybridization

Jaishree Garhyan, Raad Z Gharaibeh, Stephen McGee, Cynthia J Gibas

Journal:

BMC Research Notes

Year:

2013

Language:

english

File:

PDF, 336 KB

english, 2013

14

Role of an Electrostatic Network of Residues in the Enzymatic Action of the Rhizomucor miehei Lipase Family †

Herrgård, Sanna, Gibas, Cynthia J., Subramaniam, Shankar

Journal:

Year:

2000

Language:

english

File:

PDF, 311 KB

english, 2000

15

pH Dependence of Antibody/Lysozyme Complexation †

Gibas, Cynthia J., Subramaniam, Shankar, McCammon, J. Andrew, Braden, Bradford C., Poljak, Roberto J.

Journal:

Year:

1997

Language:

english

File:

PDF, 1.23 MB

english, 1997

16

[IEEE 2012 IEEE Symposium on Biological Data Visualization (BioVis) - Seattle, WA, USA (2012.10.14-2012.10.15)] 2012 IEEE Symposium on Biological Data Visualization (BioVis) - Gene-RiViT: A visualization tool for comparative analysis of gene neighborhoods in prokaryotes

Price, Adam, Kosara, Robert, Gibas, Cynthia

Year:

2012

Language:

english

File:

PDF, 423 KB

english, 2012

17

Impact of analytic provenance in genome analysis

Morrison, Shatavia S, Pyzh, Roman, Jeon, Myung S, Amaro, Carmen, Roig, Francisco J, Baker-Austin, Craig, Oliver, James D, Gibas, Cynthia J

Journal:

Year:

2014

Language:

english

File:

PDF, 1.67 MB

english, 2014

18

Arabidopsis Transcriptome Analysis Reveals Key Roles of Melatonin in Plant Defense Systems

Weeda, Sarah, Zhang, Na, Zhao, Xiaolei, Ndip, Grace, Guo, Yangdong, Buck, Gregory A., Fu, Conggui, Ren, Shuxin, Gibas, Cynthia

Journal:

Year:

2014

Language:

english

File:

PDF, 445 KB

english, 2014

19

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

Supek, Fran, Bošnjak, Matko, Škunca, Nives, Šmuc, Tomislav, Gibas, Cynthia

Journal:

Year:

2011

Language:

english

File:

PDF, 1.81 MB

english, 2011

20

Simultaneous Quantification of Multiple Bacteria by the BactoChip Microarray Designed to Target Species-Specific Marker Genes

Ballarini, Annalisa, Segata, Nicola, Huttenhower, Curtis, Jousson, Olivier, Gibas, Cynthia

Journal:

Year:

2013

Language:

english

File:

PDF, 869 KB

english, 2013

21

Expression Profile of the Schistosoma japonicum Degradome Reveals Differential Protease Expression Patterns and Potential Anti-schistosomal Intervention Targets

Liu, Shuai, Cai, Pengfei, Piao, Xianyu, Hou, Nan, Zhou, Xiaosu, Wu, Chuang, Wang, Heng, Chen, Qijun, Gibas, Cynthia

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 1.95 MB

english, 2014

22

Transcriptomics and Comparative Analysis of Three Antarctic Notothenioid Fishes

Shin, Seung Chul, Kim, Su Jin, Lee, Jong Kyu, Ahn, Do Hwan, Kim, Min Gyu, Lee, Hyoungseok, Lee, Jungeun, Kim, Bum-Keun, Park, Hyun, Gibas, Cynthia

Journal:

Year:

2012

Language:

english

File:

PDF, 1.20 MB

english, 2012

23

Consistent Errors in First Strand cDNA Due to Random Hexamer Mispriming

van Gurp, Thomas P., McIntyre, Lauren M., Verhoeven, Koen J. F., Gibas, Cynthia

Journal:

Year:

2013

Language:

english

File:

PDF, 270 KB

english, 2013

24

Guest editors' introduction to the Proceedings of the 9thInternational Symposium on Biomedical Research and Applications

Gibas, Cynthia J, Cai, Zhipeng, Eulenstein, Oliver

Journal:

BMC Bioinformatics

Year:

2014

Language:

english

File:

PDF, 226 KB

english, 2014

25

ChemInform Abstract: Physico-Chemical Foundations Underpinning Microarray and Next Generation Sequencing Experiments

Harrison, Andrew, Binder, Hans, Buhot, Arnaud, Burden, Conrad J., Carlon, Enrico, Gibas, Cynthia, Gamble, Lara J., Halperin, Avraham, Hooyberghs, Jef, Kreil, David P., et al., et al.

Journal:

Year:

2013

File:

PDF, 18 KB

2013

26

Guest Editors Introduction to the Special Section on Bioinformatics Research and Applications

Cai, Zhipeng, Eulenstein, Oliver, Gibas, Cynthia

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Year:

2014

Language:

english

File:

PDF, 84 KB

english, 2014

27

Draft Genome Sequence of Vibrio toranzoniae Strain CECT 7225 T

Lasa, Aide, Gibas, Cynthia J., Romalde, Jesus L.

Journal:

Genome Announcements

Year:

2016

Language:

english

File:

PDF, 154 KB

english, 2016

28

Simulome: a genome sequence and variant simulator

Price, Adam, Gibas, Cynthia

Journal:

Year:

2017

Language:

english

File:

PDF, 74 KB

english, 2017

29

Comparison of the Sequence-Dependent Fluorescence of the Cyanine Dyes Cy3, Cy5, DyLight DY547 and DyLight DY647 on Single-Stranded DNA

Kretschy, Nicole, Somoza, Mark M., Gibas, Cynthia

Journal:

Year:

2014

Language:

english

File:

PDF, 393 KB

english, 2014

30

Identification of Differentially Expressed Genes in Leaf of Reaumuria soongorica under PEG-Induced Drought Stress by Digital Gene Expression Profiling

Liu, Yubing, Liu, Meiling, Li, Xinrong, Cao, Bo, Ma, Xiaofei, Gibas, Cynthia

Journal:

Year:

2014

Language:

english

File:

PDF, 486 KB

english, 2014

31

Application of Equilibrium Models of Solution Hybridization to Microarray Design and Analysis

Gharaibeh, Raad Z., Newton, Joshua M., Weller, Jennifer W., Gibas, Cynthia J., Khodursky, Arkady B.

Journal:

Year:

2010

Language:

english

File:

PDF, 347 KB

english, 2010

32

Targeted p120-Catenin Ablation Disrupts Dental Enamel Development

Bartlett, John D., Dobeck, Justine M., Tye, Coralee E., Perez-Moreno, Mirna, Stokes, Nicole, Reynolds, Albert B., Fuchs, Elaine, Skobe, Ziedonis, Gibas, Cynthia

Journal:

Year:

2010

Language:

english

File:

PDF, 1.38 MB

english, 2010

33

HMMSplicer: A Tool for Efficient and Sensitive Discovery of Known and Novel Splice Junctions in RNA-Seq Data

Dimon, Michelle T., Sorber, Katherine, DeRisi, Joseph L., Gibas, Cynthia

Journal:

Year:

2010

Language:

english

File:

PDF, 1.08 MB

english, 2010

34

Computing the Partition Function for Kinetically Trapped RNA Secondary Structures

Lorenz, William A., Clote, Peter, Gibas, Cynthia

Journal:

Year:

2011

Language:

english

File:

PDF, 864 KB

english, 2011

35

Regional Regulation of Transcription in the Bovine Genome

Kommadath, Arun, Nie, Haisheng, Groenen, Martien A. M., te Pas, Marinus F. W., Veerkamp, Roel F., Smits, Mari A., Gibas, Cynthia

Journal:

Year:

2011

Language:

english

File:

PDF, 558 KB

english, 2011

36

Systematic Spatial Bias in DNA Microarray Hybridization Is Caused by Probe Spot Position-Dependent Variability in Lateral Diffusion

Steger, Doris, Berry, David, Haider, Susanne, Horn, Matthias, Wagner, Michael, Stocker, Roman, Loy, Alexander, Gibas, Cynthia

Journal:

Year:

2011

Language:

english

File:

PDF, 792 KB

english, 2011

37

Toward an Efficient Method of Identifying Core Genes for Evolutionary and Functional Microbial Phylogenies

Segata, Nicola, Huttenhower, Curtis, Gibas, Cynthia

Journal:

Year:

2011

Language:

english

File:

PDF, 1.75 MB

english, 2011

38

Segtor: Rapid Annotation of Genomic Coordinates and Single Nucleotide Variations Using Segment Trees

Renaud, Gabriel, Neves, Pedro, Folador, Edson Luiz, Ferreira, Carlos Gil, Passetti, Fabio, Gibas, Cynthia

Journal:

Year:

2011

Language:

english

File:

PDF, 629 KB

english, 2011

39

Deep-Sequencing Analysis of the Mouse Transcriptome Response to Infection with Brucella melitensis Strains of Differing Virulence

Wang, Fangkun, Hu, Sen, Liu, Wenxing, Qiao, Zujian, Gao, Yuzhe, Bu, Zhigao, Gibas, Cynthia

Journal:

Year:

2011

Language:

english

File:

PDF, 991 KB

english, 2011

40

The Use of EST Expression Matrixes for the Quality Control of Gene Expression Data

Milnthorpe, Andrew T., Soloviev, Mikhail, Gibas, Cynthia

Journal:

Year:

2012

Language:

english

File:

PDF, 949 KB

english, 2012

41

Enchytraeus albidus Microarray: Enrichment, Design, Annotation and Database (EnchyBASE)

Novais, Sara C., Arrais, Joel, Lopes, Pedro, Vandenbrouck, Tine, De Coen, Wim, Roelofs, Dick, Soares, Amadeu M. V. M., Amorim, Mónica J. B., Gibas, Cynthia

Journal:

Year:

2012

Language:

english

File:

PDF, 439 KB

english, 2012

42

Transcriptome of Protoplasts Reprogrammed into Stem Cells in Physcomitrella patens

Xiao, Lihong, Zhang, Liechi, Yang, Ge, Zhu, Honglin, He, Yikun, Gibas, Cynthia

Journal:

Year:

2012

Language:

english

File:

PDF, 1.09 MB

english, 2012

43

Global Transcriptome Analysis of the Scorpion Centruroides noxius: New Toxin Families and Evolutionary Insights from an Ancestral Scorpion Species

Rendón-Anaya, Martha, Delaye, Luis, Possani, Lourival D., Herrera-Estrella, Alfredo, Gibas, Cynthia

Journal:

Year:

2012

Language:

english

File:

PDF, 799 KB

english, 2012

44

Transcriptional Analysis of Prebiotic Uptake and Catabolism by Lactobacillus acidophilus NCFM

Andersen, Joakim Mark, Barrangou, Rodolphe, Hachem, Maher Abou, Lahtinen, Sampo J., Goh, Yong-Jun, Svensson, Birte, Klaenhammer, Todd R., Gibas, Cynthia

Journal:

Year:

2012

Language:

english

File:

PDF, 693 KB

english, 2012

45

Comprehensive FISH Probe Design Tool Applied to Imaging Human Immunoglobulin Class Switch Recombination

Nedbal, Jakub, Hobson, Philip S., Fear, David J., Heintzmann, Rainer, Gould, Hannah J, Gibas, Cynthia

Journal:

Year:

2012

Language:

english

File:

PDF, 317 KB

english, 2012

46

Extensive Modulation of the Transcription Factor Transcriptome during Somatic Embryogenesis in Arabidopsis thaliana

Gliwicka, Marta, Nowak, Katarzyna, Balazadeh, Salma, Mueller-Roeber, Bernd, Gaj, Malgorzata D., Gibas, Cynthia

Journal:

Year:

2013

Language:

english

File:

PDF, 1.44 MB

english, 2013

47

SNP Detection in mRNA in Living Cells Using Allele Specific FRET Probes

Dahan, Liya, Huang, Lingyan, Kedmi, Ranit, Behlke, Mark A., Peer, Dan, Gibas, Cynthia

Journal:

Year:

2013

Language:

english

File:

PDF, 1.38 MB

english, 2013

48

Generation of Physical Map Contig-Specific Sequences Useful for Whole Genome Sequence Scaffolding

Jiang, Yanliang, Ninwichian, Parichart, Liu, Shikai, Zhang, Jiaren, Kucuktas, Huseyin, Sun, Fanyue, Kaltenboeck, Ludmilla, Sun, Luyang, Bao, Lisui, Liu, Zhanjiang, Gibas, Cynthia

Journal:

Year:

2013

Language:

english

File:

PDF, 728 KB

english, 2013

49

PD5: A General Purpose Library for Primer Design Software

Riley, Michael C., Aubrey, Wayne, Young, Michael, Clare, Amanda, Gibas, Cynthia

Journal:

Year:

2013

Language:

english

File:

PDF, 1.22 MB

english, 2013

50

Evolutionary Dynamics of Overlapped Genes in Salmonella

Luo, Yingqin, Battistuzzi, Fabia, Lin, Kui, Gibas, Cynthia

Journal:

Year:

2013

Language:

english

File:

PDF, 2.31 MB

english, 2013